Draft genome sequence of Bacillus velezensis 2A-2B strain: a rhizospheric inhabitant of Sporobolus airoides (Torr.) Torr., with antifungal activity against root rot causing phytopathogens.
Identifieur interne : 000A23 ( Main/Exploration ); précédent : 000A22; suivant : 000A24Draft genome sequence of Bacillus velezensis 2A-2B strain: a rhizospheric inhabitant of Sporobolus airoides (Torr.) Torr., with antifungal activity against root rot causing phytopathogens.
Auteurs : Inés Martínez-Raudales [Mexique] ; Yumiko De La Cruz-Rodríguez [Mexique] ; Alejandro Alvarado-Gutiérrez [Mexique] ; Julio Vega-Arreguín [Mexique] ; Ahuitz Fraire-Mayorga [Mexique] ; Miguel Alvarado-Rodríguez [Mexique] ; Victor Balderas-Hernández [Mexique] ; Saúl Fraire-Velázquez [Mexique]Source :
- Standards in genomic sciences [ 1944-3277 ] ; 2017.
Abstract
A Bacillus velezensis strain from the rhizosphere of Sporobolus airoides (Torr.) Torr., a grass in central-north México, was isolated during a biocontrol of phytopathogens scrutiny study. The 2A-2B strain exhibited at least 60% of growth inhibition of virulent isolates of phytopathogens causing root rot. These phytopathogens include Phytophthora capsici, Fusarium solani, Fusarium oxysporum and Rhizoctonia solani. Furthermore, the 2A-2B strain is an indolacetic acid producer, and a plant inducer of PR1, which is an induced systemic resistance related gene in chili pepper plantlets. Whole genome sequencing was performed to generate a draft genome assembly of 3.953 MB with 46.36% of GC content, and a N50 of 294,737. The genome contains 3713 protein coding genes and 89 RNA genes. Moreover, comparative genome analysis revealed that the 2A-2B strain had the greatest identity (98.4%) with Bacillus velezensis.
DOI: 10.1186/s40793-017-0289-4
PubMed: 29225729
PubMed Central: PMC5717847
Affiliations:
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Agronómica, Zac. CP, -98067 Zacatecas, Mexico.</nlm:affiliation><country xml:lang="fr">Mexique</country><wicri:regionArea>Laboratorio Biología Integrativa de Plantas y Microorganismos, Unidad Académica de Ciencias Biológicas, Universidad Autónoma de Zacatecas, Av. Preparatoria s/n, Col. Agronómica, Zac. CP, -98067 Zacatecas</wicri:regionArea><wicri:noRegion>-98067 Zacatecas</wicri:noRegion></affiliation></author><author><name sortKey="Alvarado Rodriguez, Miguel" sort="Alvarado Rodriguez, Miguel" uniqKey="Alvarado Rodriguez M" first="Miguel" last="Alvarado-Rodríguez">Miguel Alvarado-Rodríguez</name><affiliation wicri:level="1"><nlm:affiliation>Laboratorio Biología Integrativa de Plantas y Microorganismos, Unidad Académica de Ciencias Biológicas, Universidad Autónoma de Zacatecas, Av. Preparatoria s/n, Col. Agronómica, Zac. CP, -98067 Zacatecas, Mexico.</nlm:affiliation><country xml:lang="fr">Mexique</country><wicri:regionArea>Laboratorio Biología Integrativa de Plantas y Microorganismos, Unidad Académica de Ciencias Biológicas, Universidad Autónoma de Zacatecas, Av. Preparatoria s/n, Col. Agronómica, Zac. CP, -98067 Zacatecas</wicri:regionArea><wicri:noRegion>-98067 Zacatecas</wicri:noRegion></affiliation></author><author><name sortKey="Balderas Hernandez, Victor" sort="Balderas Hernandez, Victor" uniqKey="Balderas Hernandez V" first="Victor" last="Balderas-Hernández">Victor Balderas-Hernández</name><affiliation wicri:level="1"><nlm:affiliation>Laboratorio Biología Integrativa de Plantas y Microorganismos, Unidad Académica de Ciencias Biológicas, Universidad Autónoma de Zacatecas, Av. Preparatoria s/n, Col. Agronómica, Zac. CP, -98067 Zacatecas, Mexico.</nlm:affiliation><country xml:lang="fr">Mexique</country><wicri:regionArea>Laboratorio Biología Integrativa de Plantas y Microorganismos, Unidad Académica de Ciencias Biológicas, Universidad Autónoma de Zacatecas, Av. Preparatoria s/n, Col. Agronómica, Zac. CP, -98067 Zacatecas</wicri:regionArea><wicri:noRegion>-98067 Zacatecas</wicri:noRegion></affiliation></author><author><name sortKey="Fraire Velazquez, Saul" sort="Fraire Velazquez, Saul" uniqKey="Fraire Velazquez S" first="Saúl" last="Fraire-Velázquez">Saúl Fraire-Velázquez</name><affiliation wicri:level="1"><nlm:affiliation>Laboratorio Biología Integrativa de Plantas y Microorganismos, Unidad Académica de Ciencias Biológicas, Universidad Autónoma de Zacatecas, Av. Preparatoria s/n, Col. Agronómica, Zac. CP, -98067 Zacatecas, Mexico.</nlm:affiliation><country xml:lang="fr">Mexique</country><wicri:regionArea>Laboratorio Biología Integrativa de Plantas y Microorganismos, Unidad Académica de Ciencias Biológicas, Universidad Autónoma de Zacatecas, Av. Preparatoria s/n, Col. Agronómica, Zac. 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Torr<i>.</i>, with antifungal activity against root rot causing phytopathogens.</title><author><name sortKey="Martinez Raudales, Ines" sort="Martinez Raudales, Ines" uniqKey="Martinez Raudales I" first="Inés" last="Martínez-Raudales">Inés Martínez-Raudales</name><affiliation wicri:level="1"><nlm:affiliation>Laboratorio Biología Integrativa de Plantas y Microorganismos, Unidad Académica de Ciencias Biológicas, Universidad Autónoma de Zacatecas, Av. Preparatoria s/n, Col. Agronómica, Zac. CP, -98067 Zacatecas, Mexico.</nlm:affiliation><country xml:lang="fr">Mexique</country><wicri:regionArea>Laboratorio Biología Integrativa de Plantas y Microorganismos, Unidad Académica de Ciencias Biológicas, Universidad Autónoma de Zacatecas, Av. Preparatoria s/n, Col. Agronómica, Zac. CP, -98067 Zacatecas</wicri:regionArea><wicri:noRegion>-98067 Zacatecas</wicri:noRegion></affiliation></author><author><name sortKey="De La Cruz Rodriguez, Yumiko" sort="De La Cruz Rodriguez, Yumiko" uniqKey="De La Cruz Rodriguez Y" first="Yumiko" last="De La Cruz-Rodríguez">Yumiko De La Cruz-Rodríguez</name><affiliation wicri:level="1"><nlm:affiliation>Laboratorio Biología Integrativa de Plantas y Microorganismos, Unidad Académica de Ciencias Biológicas, Universidad Autónoma de Zacatecas, Av. Preparatoria s/n, Col. Agronómica, Zac. CP, -98067 Zacatecas, Mexico.</nlm:affiliation><country xml:lang="fr">Mexique</country><wicri:regionArea>Laboratorio Biología Integrativa de Plantas y Microorganismos, Unidad Académica de Ciencias Biológicas, Universidad Autónoma de Zacatecas, Av. Preparatoria s/n, Col. Agronómica, Zac. CP, -98067 Zacatecas</wicri:regionArea><wicri:noRegion>-98067 Zacatecas</wicri:noRegion></affiliation></author><author><name sortKey="Alvarado Gutierrez, Alejandro" sort="Alvarado Gutierrez, Alejandro" uniqKey="Alvarado Gutierrez A" first="Alejandro" last="Alvarado-Gutiérrez">Alejandro Alvarado-Gutiérrez</name><affiliation wicri:level="1"><nlm:affiliation>Laboratorio Biología Integrativa de Plantas y Microorganismos, Unidad Académica de Ciencias Biológicas, Universidad Autónoma de Zacatecas, Av. Preparatoria s/n, Col. Agronómica, Zac. CP, -98067 Zacatecas, Mexico.</nlm:affiliation><country xml:lang="fr">Mexique</country><wicri:regionArea>Laboratorio Biología Integrativa de Plantas y Microorganismos, Unidad Académica de Ciencias Biológicas, Universidad Autónoma de Zacatecas, Av. Preparatoria s/n, Col. Agronómica, Zac. CP, -98067 Zacatecas</wicri:regionArea><wicri:noRegion>-98067 Zacatecas</wicri:noRegion></affiliation></author><author><name sortKey="Vega Arreguin, Julio" sort="Vega Arreguin, Julio" uniqKey="Vega Arreguin J" first="Julio" last="Vega-Arreguín">Julio Vega-Arreguín</name><affiliation wicri:level="1"><nlm:affiliation>ENES-León, Universidad Nacional Autónoma de México, Mexico City, Mexico.</nlm:affiliation><country xml:lang="fr">Mexique</country><wicri:regionArea>ENES-León, Universidad Nacional Autónoma de México, Mexico City</wicri:regionArea><wicri:noRegion>Mexico City</wicri:noRegion></affiliation></author><author><name sortKey="Fraire Mayorga, Ahuitz" sort="Fraire Mayorga, Ahuitz" uniqKey="Fraire Mayorga A" first="Ahuitz" last="Fraire-Mayorga">Ahuitz Fraire-Mayorga</name><affiliation wicri:level="1"><nlm:affiliation>Laboratorio Biología Integrativa de Plantas y Microorganismos, Unidad Académica de Ciencias Biológicas, Universidad Autónoma de Zacatecas, Av. Preparatoria s/n, Col. Agronómica, Zac. CP, -98067 Zacatecas, Mexico.</nlm:affiliation><country xml:lang="fr">Mexique</country><wicri:regionArea>Laboratorio Biología Integrativa de Plantas y Microorganismos, Unidad Académica de Ciencias Biológicas, Universidad Autónoma de Zacatecas, Av. Preparatoria s/n, Col. Agronómica, Zac. CP, -98067 Zacatecas</wicri:regionArea><wicri:noRegion>-98067 Zacatecas</wicri:noRegion></affiliation></author><author><name sortKey="Alvarado Rodriguez, Miguel" sort="Alvarado Rodriguez, Miguel" uniqKey="Alvarado Rodriguez M" first="Miguel" last="Alvarado-Rodríguez">Miguel Alvarado-Rodríguez</name><affiliation wicri:level="1"><nlm:affiliation>Laboratorio Biología Integrativa de Plantas y Microorganismos, Unidad Académica de Ciencias Biológicas, Universidad Autónoma de Zacatecas, Av. Preparatoria s/n, Col. Agronómica, Zac. CP, -98067 Zacatecas, Mexico.</nlm:affiliation><country xml:lang="fr">Mexique</country><wicri:regionArea>Laboratorio Biología Integrativa de Plantas y Microorganismos, Unidad Académica de Ciencias Biológicas, Universidad Autónoma de Zacatecas, Av. Preparatoria s/n, Col. Agronómica, Zac. CP, -98067 Zacatecas</wicri:regionArea><wicri:noRegion>-98067 Zacatecas</wicri:noRegion></affiliation></author><author><name sortKey="Balderas Hernandez, Victor" sort="Balderas Hernandez, Victor" uniqKey="Balderas Hernandez V" first="Victor" last="Balderas-Hernández">Victor Balderas-Hernández</name><affiliation wicri:level="1"><nlm:affiliation>Laboratorio Biología Integrativa de Plantas y Microorganismos, Unidad Académica de Ciencias Biológicas, Universidad Autónoma de Zacatecas, Av. Preparatoria s/n, Col. Agronómica, Zac. CP, -98067 Zacatecas, Mexico.</nlm:affiliation><country xml:lang="fr">Mexique</country><wicri:regionArea>Laboratorio Biología Integrativa de Plantas y Microorganismos, Unidad Académica de Ciencias Biológicas, Universidad Autónoma de Zacatecas, Av. Preparatoria s/n, Col. Agronómica, Zac. CP, -98067 Zacatecas</wicri:regionArea><wicri:noRegion>-98067 Zacatecas</wicri:noRegion></affiliation></author><author><name sortKey="Fraire Velazquez, Saul" sort="Fraire Velazquez, Saul" uniqKey="Fraire Velazquez S" first="Saúl" last="Fraire-Velázquez">Saúl Fraire-Velázquez</name><affiliation wicri:level="1"><nlm:affiliation>Laboratorio Biología Integrativa de Plantas y Microorganismos, Unidad Académica de Ciencias Biológicas, Universidad Autónoma de Zacatecas, Av. Preparatoria s/n, Col. Agronómica, Zac. CP, -98067 Zacatecas, Mexico.</nlm:affiliation><country xml:lang="fr">Mexique</country><wicri:regionArea>Laboratorio Biología Integrativa de Plantas y Microorganismos, Unidad Académica de Ciencias Biológicas, Universidad Autónoma de Zacatecas, Av. Preparatoria s/n, Col. Agronómica, Zac. CP, -98067 Zacatecas</wicri:regionArea><wicri:noRegion>-98067 Zacatecas</wicri:noRegion></affiliation></author></analytic><series><title level="j">Standards in genomic sciences</title><idno type="ISSN">1944-3277</idno><imprint><date when="2017" type="published">2017</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">A <i>Bacillus velezensis</i> strain from the rhizosphere of <i>Sporobolus airoides</i> (Torr.) Torr<i>.</i>, a grass in central-north México, was isolated during a biocontrol of phytopathogens scrutiny study. The 2A-2B strain exhibited at least 60% of growth inhibition of virulent isolates of phytopathogens causing root rot. These phytopathogens include <i>Phytophthora capsici</i>, <i>Fusarium solani</i>, <i>Fusarium oxysporum</i> and <i>Rhizoctonia solani</i>. Furthermore, the 2A-2B strain is an indolacetic acid producer, and a plant inducer of PR1, which is an induced systemic resistance related gene in chili pepper plantlets. Whole genome sequencing was performed to generate a draft genome assembly of 3.953 MB with 46.36% of GC content, and a N50 of 294,737. The genome contains 3713 protein coding genes and 89 RNA genes. Moreover, comparative genome analysis revealed that the 2A-2B strain had the greatest identity (98.4%) with <i>Bacillus velezensis.</i></div></front></TEI><pubmed><MedlineCitation Status="PubMed-not-MEDLINE" Owner="NLM"><PMID Version="1">29225729</PMID><DateRevised><Year>2020</Year><Month>10</Month><Day>01</Day></DateRevised><Article PubModel="Electronic-eCollection"><Journal><ISSN IssnType="Print">1944-3277</ISSN><JournalIssue CitedMedium="Print"><Volume>12</Volume><PubDate><Year>2017</Year></PubDate></JournalIssue><Title>Standards in genomic sciences</Title><ISOAbbreviation>Stand Genomic Sci</ISOAbbreviation></Journal><ArticleTitle>Draft genome sequence of <i>Bacillus velezensis</i> 2A-2B strain: a rhizospheric inhabitant of <i>Sporobolus airoides</i> (Torr.) Torr<i>.</i>, with antifungal activity against root rot causing phytopathogens.</ArticleTitle><Pagination><MedlinePgn>73</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1186/s40793-017-0289-4</ELocationID><Abstract><AbstractText>A <i>Bacillus velezensis</i> strain from the rhizosphere of <i>Sporobolus airoides</i> (Torr.) Torr<i>.</i>, a grass in central-north México, was isolated during a biocontrol of phytopathogens scrutiny study. The 2A-2B strain exhibited at least 60% of growth inhibition of virulent isolates of phytopathogens causing root rot. These phytopathogens include <i>Phytophthora capsici</i>, <i>Fusarium solani</i>, <i>Fusarium oxysporum</i> and <i>Rhizoctonia solani</i>. Furthermore, the 2A-2B strain is an indolacetic acid producer, and a plant inducer of PR1, which is an induced systemic resistance related gene in chili pepper plantlets. Whole genome sequencing was performed to generate a draft genome assembly of 3.953 MB with 46.36% of GC content, and a N50 of 294,737. The genome contains 3713 protein coding genes and 89 RNA genes. Moreover, comparative genome analysis revealed that the 2A-2B strain had the greatest identity (98.4%) with <i>Bacillus velezensis.</i></AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Martínez-Raudales</LastName><ForeName>Inés</ForeName><Initials>I</Initials><AffiliationInfo><Affiliation>Laboratorio Biología Integrativa de Plantas y Microorganismos, Unidad Académica de Ciencias Biológicas, Universidad Autónoma de Zacatecas, Av. Preparatoria s/n, Col. Agronómica, Zac. CP, -98067 Zacatecas, Mexico.</Affiliation><Identifier Source="ISNI">0000 0001 2105 1788</Identifier><Identifier Source="GRID">grid.412865.c</Identifier></AffiliationInfo></Author><Author ValidYN="Y"><LastName>De La Cruz-Rodríguez</LastName><ForeName>Yumiko</ForeName><Initials>Y</Initials><AffiliationInfo><Affiliation>Laboratorio Biología Integrativa de Plantas y Microorganismos, Unidad Académica de Ciencias Biológicas, Universidad Autónoma de Zacatecas, Av. Preparatoria s/n, Col. Agronómica, Zac. CP, -98067 Zacatecas, Mexico.</Affiliation><Identifier Source="ISNI">0000 0001 2105 1788</Identifier><Identifier Source="GRID">grid.412865.c</Identifier></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Alvarado-Gutiérrez</LastName><ForeName>Alejandro</ForeName><Initials>A</Initials><AffiliationInfo><Affiliation>Laboratorio Biología Integrativa de Plantas y Microorganismos, Unidad Académica de Ciencias Biológicas, Universidad Autónoma de Zacatecas, Av. Preparatoria s/n, Col. Agronómica, Zac. CP, -98067 Zacatecas, Mexico.</Affiliation><Identifier Source="ISNI">0000 0001 2105 1788</Identifier><Identifier Source="GRID">grid.412865.c</Identifier></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Vega-Arreguín</LastName><ForeName>Julio</ForeName><Initials>J</Initials><AffiliationInfo><Affiliation>ENES-León, Universidad Nacional Autónoma de México, Mexico City, Mexico.</Affiliation><Identifier Source="ISNI">0000 0001 2159 0001</Identifier><Identifier Source="GRID">grid.9486.3</Identifier></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Fraire-Mayorga</LastName><ForeName>Ahuitz</ForeName><Initials>A</Initials><AffiliationInfo><Affiliation>Laboratorio Biología Integrativa de Plantas y Microorganismos, Unidad Académica de Ciencias Biológicas, Universidad Autónoma de Zacatecas, Av. Preparatoria s/n, Col. Agronómica, Zac. CP, -98067 Zacatecas, Mexico.</Affiliation><Identifier Source="ISNI">0000 0001 2105 1788</Identifier><Identifier Source="GRID">grid.412865.c</Identifier></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Alvarado-Rodríguez</LastName><ForeName>Miguel</ForeName><Initials>M</Initials><AffiliationInfo><Affiliation>Laboratorio Biología Integrativa de Plantas y Microorganismos, Unidad Académica de Ciencias Biológicas, Universidad Autónoma de Zacatecas, Av. Preparatoria s/n, Col. Agronómica, Zac. CP, -98067 Zacatecas, Mexico.</Affiliation><Identifier Source="ISNI">0000 0001 2105 1788</Identifier><Identifier Source="GRID">grid.412865.c</Identifier></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Balderas-Hernández</LastName><ForeName>Victor</ForeName><Initials>V</Initials><AffiliationInfo><Affiliation>Laboratorio Biología Integrativa de Plantas y Microorganismos, Unidad Académica de Ciencias Biológicas, Universidad Autónoma de Zacatecas, Av. Preparatoria s/n, Col. Agronómica, Zac. CP, -98067 Zacatecas, Mexico.</Affiliation><Identifier Source="ISNI">0000 0001 2105 1788</Identifier><Identifier Source="GRID">grid.412865.c</Identifier></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Fraire-Velázquez</LastName><ForeName>Saúl</ForeName><Initials>S</Initials><Identifier Source="ORCID">0000-0003-2949-1678</Identifier><AffiliationInfo><Affiliation>Laboratorio Biología Integrativa de Plantas y Microorganismos, Unidad Académica de Ciencias Biológicas, Universidad Autónoma de Zacatecas, Av. Preparatoria s/n, Col. Agronómica, Zac. CP, -98067 Zacatecas, Mexico.</Affiliation><Identifier Source="ISNI">0000 0001 2105 1788</Identifier><Identifier Source="GRID">grid.412865.c</Identifier></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D002363">Case Reports</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2017</Year><Month>12</Month><Day>05</Day></ArticleDate></Article><MedlineJournalInfo><Country>England</Country><MedlineTA>Stand Genomic Sci</MedlineTA><NlmUniqueID>101530505</NlmUniqueID><ISSNLinking>1944-3277</ISSNLinking></MedlineJournalInfo><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="N">Bacterial biocontrol agent</Keyword><Keyword MajorTopicYN="N">Capsicum annuum L</Keyword><Keyword MajorTopicYN="N">Chile wilt biocontrol</Keyword><Keyword MajorTopicYN="N">Fungal inhibition</Keyword><Keyword MajorTopicYN="N">Phytophthora capsici</Keyword><Keyword MajorTopicYN="N">Root rot biocontrol</Keyword></KeywordList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2017</Year><Month>03</Month><Day>24</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2017</Year><Month>11</Month><Day>24</Day></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2017</Year><Month>12</Month><Day>12</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2017</Year><Month>12</Month><Day>12</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2017</Year><Month>12</Month><Day>12</Day><Hour>6</Hour><Minute>1</Minute></PubMedPubDate></History><PublicationStatus>epublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">29225729</ArticleId><ArticleId IdType="doi">10.1186/s40793-017-0289-4</ArticleId><ArticleId IdType="pii">289</ArticleId><ArticleId IdType="pmc">PMC5717847</ArticleId></ArticleIdList><ReferenceList><Reference><Citation>Bioinformatics. 2014 Sep 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